| Protein ZmZIM10 | |
|---|---|
|
ZmZIM10 is a protein in the ZIM family.
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| Information | |
| TF Name: | ZmZIM10 |
| Species: | Maize |
| TF Family: | ZIM |
| Gene Name(Synonym): | ZIM10 |
| Uniprot ID: | B6UG02 |
Protein ZmZIM10
ZmZIM10 is a protein in the ZIM family.
| Overview of domains present in v5 transcripts | ||
|---|---|---|
| PF06200 | PF09425 | |
| Zm00001eb223620_T001 |  | |
Protein-DNA Interactions
Meme Logos for Maize v4 Gene IDs
| Gene ID | Type | MEME Logo | Sequence | FIMO | Position |
|---|---|---|---|---|---|
| Zm00001d014253 | DAPseq |  |
sequence | fimo | position |
| Zm00001d014253 | DAPseq |  |
sequence | fimo | position |
| Zm00001d014253 | ChIPseq |  |
sequence | fimo | position |
| Zm00001d014253 | PChIPseq |  |
sequence | fimo | position |
Interactions where ZmZIM10 is the regulator
Interactions where ZmZIM10 is the target
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Zm00001eb223620_T001 from maize genome v5
Amino Acid Sequence
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MAAAAPSGGTGKNTAATATTPSRFAAACGALSQYVKAAEAERTRARPPVRRPLPLMPGADVDQDEPETAAQLIIVYGGRA
LVLDDVAADKAADLLRLAAAAAARGGTEQPLCSLADLPVARKASLQRFMEKRKDRVAARAEPYRRRRPVGDRRNDLALEL
MAAAAPSGGTGKNTAATATTPSRFAAACGALSQYVKAAEAERTRARPPVRRPLPLMPGADVDQDEPETAAQLIIVYGGRA
LVLDDVAADKAADLLRLAAAAAARGGTEQPLCSLADLPVARKASLQRFMEKRKDRVAARAEPYRRRRPVGDRRNDLALEL
MAAAAPSGGTGKNTAATATTPSRFAAACGALSQYVKAAEAERTRARPPVRRPLPLMPGADVDQDEPETAAQLIIVYGGRA
LVLDDVAADKAADLLRLAAAAAARGGTEQPLCSLADLPVARKASLQRFMEKRKDRVAARAEPYRRRRPVGDRRNDLALEL
MAAAAPSGGTGKNTAATATTPSRFAAACGALSQYVKAAEAERTRARPPVRRPLPLMPGADVDQDEPETAAQLIIVYGGRA
LVLDDVAADKAADLLRLAAAAAARGGTEQPLCSLADLPVARKASLQRFMEKRKDRVAARAEPYRRRRPVGDRRNDLALEL
MAAAAPSGGTGKNTAATATTPSRFAAACGALSQYVKAAEAERTRARPPVRRPLPLMPGADVDQDEPETAAQLIIVYGGRA
LVLDDVAADKAADLLRLAAAAAARGGTEQPLCSLADLPVARKASLQRFMEKRKDRVAARAEPYRRRRPVGDRRNDLALEL
MAAAAPSGGTGKNTAATATTPSRFAAACGALSQYVKAAEAERTRARPPVRRPLPLMPGADVDQDEPETAAQLIIVYGGRA
LVLDDVAADKAADLLRLAAAAAARGGTEQPLCSLADLPVARKASLQRFMEKRKDRVAARAEPYRRRRPVGDRRNDLALEL
| Secondary Structure Color Code | |
|---|---|
| BEND | region with high backbone curvature without specific hydrogen bonding |
| HELX_LH_PP_P | left-handed polyproline helix |
| HELX_RH_3T_P | right-handed 3-10 helix |
| HELX_RH_AL_P | right-handed alpha helix |
| HELX_RH_PI_P | right-handed pi helix |
| STRN | beta strand |
| TURN_TY1_P | type I turn |
| UNDETERMINED | no data available |
| Domains Present | |
|---|---|
| PF06200 |
|
| PF09425 |
|
| Hover here to show all domains | |
Nucleotide Sequence
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ACAAGACCTCTCAACGAACCCACCG...
ACAAGACCTCTCAACGAACCCACCGAAACCCAAGCAACCAACAACGTCCGAGGCAAATCAAATTTCCATCAACCCTCCTCCTCCTCCATTCTCCAGAACAGCAGCAGCCAGCAGGTCATCGCCAGTGATGGCGGCGGCGGCACCTTCTGGAGGCACAGGAAAGAACACAGCTGCGACTGCGACGACACCGAGCCGGTTCGCGGCGGCGTGCGGCGCGCTGAGCCAGTACGTCAAGGCGGCGGAGGCCGAGAGGACGCGCGCGCGGCCGCCGGTGCGGCGGCCCCTGCCGCTCATGCCGGGCGCCGACGTCGACCAGGACGAGCCGGAAACGGCGGCGCAGCTGATCATCGTGTACGGAGGGCGGGCGCTGGTGCTCGACGACGTCGCGGCGGACAAGGCGGCGGACCTGCTGCGCCTCGCCGCGGCGGCGGCGGCGCGAGGAGGCACAGAGCAGCCGCTCTGCTCGCTCGCCGACCTACCCGTGGCCCGGAAGGCGTCGCTGCAGCGGTTCATGGAGAAGCGCAAGGACAGGGTCGCCGCCCGCGCGGAGCCGTACCGCCGGCGCCGACCCGTCGGTGACCGACGCAACGATCTCGCGCTCGAGCTGTGATTTGAGGATGTCTCGGCGGTAACTACTAGAGGACGCTGTGCTCAAGAAGCAGCCGAACGATCTCTGATGCTTCGTACAGTCAGATCATATTAATTTGTTATAACTAGATAGGTATAGGTGGATTGTTCTTATGTGTTGTGCAGCAAAACAGAAGAAAAAACTTGGAGATGAAAAGACATGGTTTCGCATTACCTTTCTTTCGCCACTAAAAATGGTTCTTTTTATTTGTCTTGAGATTCTGTGACAAAGAGATATCTATAATAACGTAGTCTTGAGATTTG
GRMZM2G173596_T01 from maize genome v3
Amino Acid Sequence
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MAAAAPSGGTGKNTAATATTPSRFAAACGALSQYVKAAEAERTRARPPVRRPLPLMPGADVDQDEPETAAQLIIVYGGRA
LVLDDVAADKAADLLRLAAAAAARGGTEQPLCSLADLPVARKASLQRFMEKRKDRVAARAEPYRRRRPVGDRRNDLALEL
Nucleotide Sequence
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ACCGAAACCCAAGCAACCAACAACG...
ACCGAAACCCAAGCAACCAACAACGTCCGAGGCAAATCAAATTTCCATCAACCCTCCTCCTCCTCCATTCTCCAGAACAGCAGCAGCCAGCAGGTCATCGCCAGTGATGGCGGCGGCGGCACCTTCTGGAGGCACAGGAAAGAACACAGCTGCGACTGCGACGACACCGAGCCGGTTCGCGGCGGCGTGCGGCGCGCTGAGCCAGTACGTCAAGGCGGCGGAGGCCGAGAGGACGCGCGCGCGGCCGCCGGTGCGGCGGCCCCTGCCGCTCATGCCGGGCGCCGACGTCGACCAGGACGAGCCGGAAACGGCGGCGCAGCTGATCATCGTGTACGGAGGGCGGGCGCTGGTGCTCGACGACGTCGCGGCGGACAAGGCGGCGGACCTGCTGCGCCTCGCCGCGGCGGCGGCGGCGCGAGGAGGCACAGAGCAGCCGCTCTGCTCGCTCGCCGACCTACCCGTGGCCCGGAAGGCGTCGCTGCAGCGGTTCATGGAGAAGCGCAAGGACAGGGTCGCCGCCCGCGCGGAGCCGTACCGCCGGCGCCGACCCGTCGGTGACCGACGCAACGATCTCGCGCTCGAGCTGTGATTTGAGGATGTCTCGGCGGTAACTACTAGAGGACGCTGTGCTCAAGAAGCAGCCGAACGATCTCTGATGCTTCGTACAGTCAGATCATATTAATTTGTTATAACTAGATAGGTATAGGTGGATTGTTCTTATGTGTTGTGCAGCAAAACAGAAGAAAAAACTTGGAGATGAAAAGACATGGTTTCGCATTACCTTTCTTTCGCCACTAAAAATGGTTCTTTTTATTTGTCTTGAGATTCTGTGACAAAGAGATATCTATAATAACGTAGTCTTGAGATT
Zm00001d014253_T001 from maize genome v4
Amino Acid Sequence
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MAAAAPSGGTGKNTAATATTPSRFAAACGALSQYVKAAEAERTRARPPVRRPLPLMPGADVDQDEPETAAQLIIVYGGRA
LVLDDVAADKAADLLRLAAAAAARGGTEQPLCSLADLPVARKASLQRFMEKRKDRVAARAEPYRRRRPVGDRRNDLALEL
Nucleotide Sequence
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ATGGCGGCGGCGGCACCTTCTGGAG...
ATGGCGGCGGCGGCACCTTCTGGAGGCACAGGAAAGAACACAGCTGCGACTGCGACGACACCGAGCCGGTTCGCGGCGGCGTGCGGCGCGCTGAGCCAGTACGTCAAGGCGGCGGAGGCCGAGAGGACGCGCGCGCGGCCGCCGGTGCGGCGGCCCCTGCCGCTCATGCCGGGCGCCGACGTCGACCAGGACGAGCCGGAAACGGCGGCGCAGCTGATCATCGTGTACGGAGGGCGGGCGCTGGTGCTCGACGACGTCGCGGCGGACAAGGCGGCGGACCTGCTGCGCCTCGCCGCGGCGGCGGCGGCGCGAGGAGGCACAGAGCAGCCGCTCTGCTCGCTCGCCGACCTACCCGTGGCCCGGAAGGCGTCGCTGCAGCGGTTCATGGAGAAGCGCAAGGACAGGGTCGCCGCCCGCGCGGAGCCGTACCGCCGGCGCCGACCCGTCGGTGACCGACGCAACGATCTCGCGCTCGAGCTGTGA
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